unetseg package

Subpackages

• unetseg.console namespace
  • Submodules
  • unetseg.console.predict module
  • unetseg.console.train module

Submodules

unetseg.evaluate module

unetseg.postprocess module

unetseg.predict module

unetseg.skeleton module

This is a skeleton file that can serve as a starting point for a Python console script. To run this script uncomment the following lines in the [options.entry_points] section in setup.cfg:

console_scripts =
     fibonacci = unetseg.skeleton:run

Then run pip install . (or pip install -e . for editable mode) which will install the command fibonacci inside your current environment.

Besides console scripts, the header (i.e. until _logger…) of this file can also be used as template for Python modules.

Note

This skeleton file can be safely removed if not needed!

References

• https://setuptools.readthedocs.io/en/latest/userguide/entry_point.html

• https://pip.pypa.io/en/stable/reference/pip_install

unetseg.skeleton.fib(n)

Fibonacci example function

Parameters

n (int) – integer

Returns

n-th Fibonacci number

Return type

int

unetseg.skeleton.main(args)

Wrapper allowing fib() to be called with string arguments in a CLI fashion

Instead of returning the value from fib(), it prints the result to the stdout in a nicely formated message.

Parameters

args (List[str]) – command line parameters as list of strings (for example ["--verbose", "42"]).

unetseg.skeleton.parse_args(args)

Parse command line parameters

Parameters

args (List[str]) – command line parameters as list of strings (for example ["--help"]).

Returns

command line parameters namespace

Return type

argparse.Namespace

unetseg.skeleton.run()

Calls main() passing the CLI arguments extracted from sys.argv

This function can be used as entry point to create console scripts with setuptools.

unetseg.skeleton.setup_logging(loglevel)

Setup basic logging

Parameters

loglevel (int) – minimum loglevel for emitting messages

unetseg.train module

unetseg.utils module

Module contents